Brief Introduction of ZHANG, Xiaofei

Time：2015-07-28 Author： ClickTimes：

ZHANG, Xiaofei
Chinese Version (中文版)

Personal Information
Name: Xiao-Fei Zhang
Email: zhangxf@mail.ccnu.edu.cn or hzhangxf@gmail.com
Address: School of Mathematics and Statistics, Central China Normal University, Wuhan, 430079, China

Education
Ph.D School of Mathematics and Computational Science, Sun Yat-Sen University, Sep. 2008- June 2013 (Supervisor: Prof. Dao-Qing Dai)
B.S. School of Mathematics and Statistics, Central China Normal University, Sep. 2004 - June 2008

Work Experience
2013.07 - Now. Assistant Professor (Lecturer), School of Mathematics and Statistics, Central China Normal University
2013.01 - 2013.07, Research Assistant, City University of Hong Kong (work with Prof. Hong Yan)

Research Interests
Statistical learning & Data mining:Graphical models, Sparse regularization methods, Feature selection, Complex networks
Bioinformatics: Protein-protein interaction network, Biomarker identification, Drug target prediction

Grants Awarded
2015.1 - 2017.12 National Science Foundation of China, 61402190, 240 thousand RMB.
2012.9 – 2013.6 The study of structure and function of protein-protein interaction networks based on graph models (Doctoral graduate innovative talents training project of Sun Yat-Sen University, twenty thousand RMB).

Awarded
2012.12 Outstanding Graduate Student National Scholarship, 2012

Journal papers

The source code used in the following papers is available at ：https://github.com/Zhangxf-ccnu

First author papers(Co-first author#)

[13] Xiao-Fei Zhang, Le Ou-Yang, Shuo Yang, Xiaohua Hu, Hong Yan, DiffGraph: An R package for identifying gene network rewiring using differential graphical models, Bioinformatics, 2018,34(9): 1571-1573. (2016 IF: 7.307, Rank: 2/57, Q1)

[12] Xiao-Fei Zhang, Le Ou-Yang, Hong Yan, Incorporating prior information into differential network analysis using non-paranormal graphical models, Bioinformatics, 2017, 33(16): 2436–2445. (2016 IF: 7.307, Rank: 2/57, Q1)

[11] Xiao-Fei Zhang, Le Ou-Yang, Hong Yan, Node-based differential network analysis in genomics, Computational Biology and Chemistry, 2017, 69: 194-201. (2015 IF: 1.014, Rank: 59/86, Q3)

[10] Xiao-Fei Zhang, Le Ou-Yang, Xing-Ming Zhao, Hong Yan, Differential network analysis from cross-platform gene expression data, Scientific Reports, 2016.9.28, 6: 34112. (2015 IF: 5.228, Rank: 7/63, Q1)

[9] Le Ou-Yang, Xiao-Fei Zhang#, Dao-Qing Dai, Meng-Yun Wu, Yuan Zhu, Zhiyong Liu, Hong Yan, Protein complex detection based on partially shared multi-view clustering, BMC Bioinformatics, 2016.9.13, 17:371. (2015 IF: 2.435, Rank: 10/56, Q1)

[8] Xiao-Fei Zhang, Le Ou-Yang, Dao-Qing Dai, Meng-Yun Wu, Yuan Zhu, Hong Yan, Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks, BMC Bioinformatics, 2016.9.9, 17:358. (2015 IF: 2.435, Rank: 10/56, Q1)

[7] Meng-Yun Wu, Xiao-Fei Zhang#, Dao-Qing Dai, Le Ou-Yang, Yuan Zhu, Hong Yan, Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer, BMC Bioinformatics, 2016.2.27, 17:108. (2015 IF: 2.435, Rank: 10/56, Q1)

[6] Xiao-Fei Zhang, Le Ou-Yang, Xiaohua Hu, Dao-Qing Dai, Identifying binary protein-protein interactions from affinity purification mass spectrometry data, BMC Genomics, 2015.10.5, 16: 745. (2014 IF: 3.986, Rank: 26/163, Q1)

[5] Xiao-Fei Zhang, Le Ou-Yang, Yuan Zhu, Meng-Yun Wu, Dao-Qing Dai, Determining minimum set of driver nodes in protein-protein interaction networks, BMC Bioinformatics, 2015.5.7, 16: 146. (2014 IF: 2.576, Rank: 11/57, Q1)

[4] Xiao-Fei Zhang, Dao-Qing Dai, Le Ou-Yang, Hong Yan, Detecting overlapping protein complexes based on a generative model with functional and topological properties, BMC Bioinformatics, 2014.6.13, 15: 186. (2013 IF: 2.672, Rank: 8/52, Q1)

[3] Xiao-Fei Zhang, Dao-Qing Dai, Le Ou-Yang, Meng-Yun Wu, Exploring overlapping functional units with various structure in protein interaction networks, PLos One, 2012.8.20, 7(8): e43092. (2011 IF: 4.092, Rank: 12/85, Q1)

[2] Xiao-Fei Zhang, Dao-Qing Dai, Xiao-Xin Li, Protein complexes discovery based on protein-protein interaction data via a regularized sparse generative network model, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2012.6.01, 9(3): 857~870. (2011 IF: 1.543, Rank: 24/116, Q1)

[1] Xiao-Fei Zhang, Dao-Qing Dai, A framework for incorporating functional interrelationships into protein function prediction algorithms, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2012.6.01, 9(3): 740~753. (2011 IF: 1.543, Rank: 24/116, Q1)

Corresponding author papers*

[6] Le Ou-Yang, Xiao-Fei Zhang*, Xing-Ming Zhao, Debby D Wang, Fu Lee Wang, Baiying Lei, Hong Yan, Joint Learning of Multiple Differential Networks With Latent Variables, IEEE transactions on cybernetics, 2018, DOI: 10.1109/TCBB.2018.2809603. (2017 IF: 8.803, Rank: 1/61, Q1).

[5] Jia-Juan Tu , Le Ou-Yang, Xiaohua Hu, Xiao-Fei Zhang*, Identifying gene network rewiring by combining gene expression and gene mutation data , IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, DOI: 10.1109/TCBB.2018.2809603. (2017 IF: 2.296, Rank: 12/123, Q1).

[4] Ting Xu, Le Ou-Yang, Xiaohua Hu, Xiao-Fei Zhang*, Identifying gene network rewiring by integrating gene expression and gene network data, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, DOI: 10.1109/TCBB.2018.2809603. (2017 IF: 2.296, Rank: 12/123, Q1)

[3] Le Ou-Yang, Hong Yan, Xiao-Fei Zhang*, A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks, BMC Bioinformatics, 2017, 8(Suppl 13):46. (2015 IF: 2.435, Rank: 10/56, Q1)

[2] Le Ou-Yang, Xiao-Fei Zhang*, Min Wu, Xiao-Li Li, Node-based learning of differential networks from multi-platform gene expression data, Methods, 2017, 129:41-49. (2015 IF:3.503, Rank:16/77, Q1)

[1] Le Ou-Yang, Hong Yan, Xiao-Fei Zhang*, Identifying differential networks based on multi-platform gene expression data, Molecular Biosystems, 2017.01.01, 13(1):183~192. (2015 IF: 2.829, Rank: 135/289, Q2)

Co-author papers

[8] Le Ou-Yang, Min Wu, Xiao-Fei Zhang, Dao-Qing Dai, Xiao-Li Li, Hong Yan, A two-layer integration framework for protein complex detection, BMC Bioinformatics, 2016.2.24, 17:100. (2015 IF: 2.435, Rank: 10/56, Q1)

[7] Le Ou-Yang, Dao-Qing Dai, Xiao-Fei Zhang, Detecting protein complexes from signed protein-protein interaction networks, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015.12.04, 12(6):1333~1344. (2014 IF: 1.438, Rank: 30/122, Q1)

[6] Le Ou-Yang, Dao-Qing Dai, Xiao-Li Li, Min Wu, Xiao-Fei Zhang, Peng Yang, Detecting temporal protein complexes from dynamic protein-protein interaction networks, BMC Bioinformatics, 2014.10.4, 15:335. (2013 IF: 2.672, Rank: 8/52, Q1)

[5] Meng-Yun Wu, Dao-Qing Dai, Xiao-Fei Zhang, Yuan Zhu, Cancer subtype discovery and biomarker identification via a new robust network clustering algorithm, PLos One, 2013.6.17, 8(6):e66256. (2012 IF: 3.730, Rank: 7/56, Q1)

[4] Le Ou-Yang, Dao-Qing Dai, Xiao-Fei Zhang, Protein complex detection via weighted ensemble custering based on Bayesian nonnegative matrix factorization, PLos One, 2013.5.2, 8(5):e62158. (2012 IF: 3.730, Rank: 7/56, Q1)

[3] Xiao-Xin Li, Dao-Qing Dai, Xiao-Fei Zhang, Chuan-Xian Ren, Structured sparse error coding for face recognition with occlusion, IEEE Transactions on Image Processing, 2013.5.01, 22(5):1889~1900. (2012 IF: 3.189, Rank:17/243 , Q1)

[2] Yuan Zhu, Xiao-Fei Zhang, Dao-Qing Dai, Meng-Yun Wu, Identifying spurious interactions and predicting missing interactions in the protein-protein interaction networks via a generative network model, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013.2.01, 10(1):219~225. (2012 IF: 1.616, Rank: 21/117, Q1)

[1] Meng-Yun Wu, Dao-Qing Dai, Yu Shi, Hong Yan, Xiao-Fei Zhang, Biomarker identification and cancer classification based on microarray data using laplace naive Bayes model with mean shrinkage, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2012.12.01, 9(6):1649~1662. (2011 IF: 1.543, Rank: 24/116, Q1)

Google Profile: http://scholar.google.com.hk/citations?user=mGTGvmUAAAAJ&hl=en

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